Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
BE(2)-C
Primary Tissue
Brain
Site of Extraction
Bone Marrow
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
neuroblastoma BE(2)-C cells transfected with control siRNA
cell type
peripheral nervous system tumour cell
cell line
BE(2)-C
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. DNA immunoprecipitated by the antibodies were purified and subjected to sequencing with Illumina HiSeq 2000 at Ramaciotti Centre for Genomics, University of New South Wales, Australia

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
4502642
Reads aligned (%)
86.1
Duplicates removed (%)
59.8
Number of peaks
209 (qval < 1E-05)

hg19

Number of total reads
4502642
Reads aligned (%)
85.4
Duplicates removed (%)
60.9
Number of peaks
212 (qval < 1E-05)

Base call quality data from DBCLS SRA