SRX105598
GSM831875: MelJuSo doxorubicin H3K4me3 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
MEL-JUSO
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
MelJuSo cells
cell type
Human skin melanoma cell line
treatment
Doxorubicin 9uM 2 hours
time point
24 hours post drug removal
cell line
MelJuSo
chip antibody
H3K4me3
chip antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM831875: MelJuSo doxorubicin H3K4me3 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26702915
Reads aligned (%)
98.2
Duplicates removed (%)
29.5
Number of peaks
30417 (qval < 1E-05)

hg19

Number of total reads
26702915
Reads aligned (%)
98.1
Duplicates removed (%)
29.6
Number of peaks
30266 (qval < 1E-05)

Base call quality data from DBCLS SRA