Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rnf2

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
Ring1b_thymocyte_Runx1KO_ChIPseq
cell type
primary thymocyte
strain
Runx1f/f,Vav1-Cre on C57BL/6 background
mouse age
5-8 weeks

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
14185517
Reads aligned (%)
97.2
Duplicates removed (%)
82.3
Number of peaks
238 (qval < 1E-05)

mm9

Number of total reads
14185517
Reads aligned (%)
96.9
Duplicates removed (%)
82.6
Number of peaks
236 (qval < 1E-05)

Base call quality data from DBCLS SRA