Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cbfb

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
CBFb_thymocyte_Runx1KO_ChIPseq
cell type
primary thymocyte
strain
Runx1f/f,Vav1-Cre on C57BL/6 background
mouse age
5-8 weeks

Sequenced DNA Library

library_name
GSM832326: CBFb_thymocyte_Runx1KO_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
9895238
Reads aligned (%)
95.9
Duplicates removed (%)
60.5
Number of peaks
235 (qval < 1E-05)

mm9

Number of total reads
9895238
Reads aligned (%)
95.7
Duplicates removed (%)
60.8
Number of peaks
256 (qval < 1E-05)

Base call quality data from DBCLS SRA