Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
hESCs
cell type
human embryonic stem cells (hESCs)
passages
p35
reprogramming method
None
clone
None
chip antibody
HDAC2 (Cell Signaling, 2545S)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
16155198
Reads aligned (%)
158.6
Duplicates removed (%)
18.3
Number of peaks
256 (qval < 1E-05)

hg38

Number of total reads
16155198
Reads aligned (%)
159.4
Duplicates removed (%)
18.2
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA