SRX105258
GSM699328: HCT116 H3K27me3-ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116
cell line
HCT116
sample type
human colon carcinoma cell line established from the primary colon carcinoma of an adult man
technique
ChIP-sequencing
binding/selection
Antibody H3K27me3 (Millipore 07-449, DAM-1588246)
antibody
H3K27me3
antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM699328: HCT116 H3K27me3-ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14295694
Reads aligned (%)
97.0
Duplicates removed (%)
17.3
Number of peaks
45 (qval < 1E-05)

hg19

Number of total reads
14295694
Reads aligned (%)
96.7
Duplicates removed (%)
17.7
Number of peaks
101 (qval < 1E-05)

Base call quality data from DBCLS SRA