Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP63

Cell type

Cell type Class
Epidermis
Cell type
Keratinocytes
MeSH Description
Epidermal cells which synthesize keratin and undergo characteristic changes as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.

Attributes by original data submitter

Sample

source_name
keratinocytes
chip antibody
anti-p63 4A4
chip antibody vendor
Santa Cruz
cell type
neonatal keratinocytes
differentiation stage
progenitor

Sequenced DNA Library

library_name
GSM830121: p63 Progenitor
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
22369675
Reads aligned (%)
18.5
Duplicates removed (%)
54.4
Number of peaks
6406 (qval < 1E-05)

hg38

Number of total reads
22369675
Reads aligned (%)
18.9
Duplicates removed (%)
53.6
Number of peaks
6259 (qval < 1E-05)

Base call quality data from DBCLS SRA