Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Epidermis

Cell type

Keratinocytes

MeSH Description

Epidermal cells which synthesize keratin and undergo characteristic changes as they move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.

Sample

source_name

keratinocytes

chip antibody

n/a

chip antibody vendor

n/a

cell type

neonatal keratinocytes

differentiation stage

n/a

Sequenced DNA Library

library_name

GSM830120: Input

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

27749203

Reads aligned (%)

99.2

Duplicates removed (%)

1.2

Number of peaks

813 (qval < 1E-05)

hg19

Number of total reads

27749203

Reads aligned (%)

98.6

Duplicates removed (%)

2.3

Number of peaks

1129 (qval < 1E-05)