Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

source_name
Input Macrophage Pool
strain
C57BL/6
tissue
Bone Marrow
cell-type
Macrophage
mutation
equal mix of Sample 3-6
treatment
equal mix of Sample 3-6
chip antibody
input

Sequenced DNA Library

library_name
GSM830477: Input Macrophage Pool
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
26474698
Reads aligned (%)
95.2
Duplicates removed (%)
14.3
Number of peaks
557 (qval < 1E-05)

mm9

Number of total reads
26474698
Reads aligned (%)
94.8
Duplicates removed (%)
14.3
Number of peaks
641 (qval < 1E-05)

Base call quality data from DBCLS SRA