Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hdac3

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

source_name
BSA HDAC3
strain
C57BL/6
tissue
Bone Marrow
cell-type
Macrophage
mutation
None/WT
treatment
BSA
chip antibody
HDAC3 (Abcam, ab7030)

Sequenced DNA Library

library_name
GSM830471: BSA HDAC3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
26572990
Reads aligned (%)
84.0
Duplicates removed (%)
18.5
Number of peaks
1589 (qval < 1E-05)

mm9

Number of total reads
26572990
Reads aligned (%)
83.9
Duplicates removed (%)
18.6
Number of peaks
1568 (qval < 1E-05)

Base call quality data from DBCLS SRA