Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jarid2

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
whole larvae
tissue
3rd instar larvae
antibody
rb-α-Jarid2 (Masamitsu Yamaguchi)
ChIP
dJarid2
genotype/variation
Jarid2 mutant

Sequenced DNA Library

library_name
GSM829676: larvae_e0_jarid2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
37352834
Reads aligned (%)
26.0
Duplicates removed (%)
71.8
Number of peaks
3520 (qval < 1E-05)

dm6

Number of total reads
37352834
Reads aligned (%)
23.7
Duplicates removed (%)
74.2
Number of peaks
5142 (qval < 1E-05)

Base call quality data from DBCLS SRA