Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Jarid2
wikigenes
PDBj
CellType: 3rd instar
ATCC
MeSH
RIKEN BRC
SRX104972
GSM829676: larvae e0 jarid2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Jarid2
Cell type
Cell type Class
Larvae
Cell type
3rd instar
NA
NA
Attributes by original data submitter
Sample
source_name
whole larvae
tissue
3rd instar larvae
antibody
rb-α-Jarid2 (Masamitsu Yamaguchi)
ChIP
dJarid2
genotype/variation
Jarid2 mutant
Sequenced DNA Library
library_name
GSM829676: larvae_e0_jarid2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
37352834
Reads aligned (%)
91.7
Duplicates removed (%)
74.2
Number of peaks
5142 (qval < 1E-05)
dm3
Number of total reads
37352834
Reads aligned (%)
92.3
Duplicates removed (%)
71.8
Number of peaks
3520 (qval < 1E-05)
Base call quality data from
DBCLS SRA