Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Su(z)12
wikigenes
PDBj
CellType: 3rd instar
ATCC
MeSH
RIKEN BRC
SRX104963
GSM829667: larvae wt1 suz12; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Su(z)12
Cell type
Cell type Class
Larvae
Cell type
3rd instar
NA
NA
Attributes by original data submitter
Sample
source_name
whole larvae
tissue
3rd instar larvae
antibody
rb-α-Su(z)12 full length (Jürg Müller)
ChIP
Su(z)12
genotype/variation
wild type
Sequenced DNA Library
library_name
GSM829667: larvae_wt1_suz12
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
35393095
Reads aligned (%)
71.3
Duplicates removed (%)
18.7
Number of peaks
5524 (qval < 1E-05)
dm6
Number of total reads
35393095
Reads aligned (%)
70.0
Duplicates removed (%)
20.0
Number of peaks
6330 (qval < 1E-05)
Base call quality data from
DBCLS SRA