Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jarid2

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
whole larvae
tissue
3rd instar larvae
antibody
rb-α-Jarid2 (Masamitsu Yamaguchi)
ChIP
dJarid2
genotype/variation
wild type

Sequenced DNA Library

library_name
GSM829666: larvae_wt2_jarid2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
38991196
Reads aligned (%)
64.8
Duplicates removed (%)
30.5
Number of peaks
11397 (qval < 1E-05)

dm6

Number of total reads
38991196
Reads aligned (%)
63.8
Duplicates removed (%)
31.5
Number of peaks
10934 (qval < 1E-05)

Base call quality data from DBCLS SRA