Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Uterus
Cell type
Endometrial stromal cells
NA
NA

Attributes by original data submitter

Sample

source_name
endometrial stromal cells
cell type
primary cells
passages
2-4
health status
healthy, proliferative phase
antibody
PGR
antibody catalog
H-190/sc-7208

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and DNA complexes were isolated with antibody. ChIP and Input DNAs were prepared for amplification by converting overhangs into phosphorylated blunt ends and adding an adenine to the 3 -ends. Illumina genomic adapters were ligated and the sample was size-fractionated (200-300 bp) on a 2% agarose gel. After a final PCR amplification step (18 cycles), the resulting DNA libraries were quantified and sequenced on GA2 (GAII).

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
33367151
Reads aligned (%)
31.2
Duplicates removed (%)
65.8
Number of peaks
4790 (qval < 1E-05)

hg38

Number of total reads
33367151
Reads aligned (%)
32.2
Duplicates removed (%)
64.9
Number of peaks
4777 (qval < 1E-05)

Base call quality data from DBCLS SRA