Antigen

Antigen Class

TFs and others

Antigen

ARID1A

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2_Arid1a_ChIP

biomaterial_provider

Cell Line from UNC Tissue Culture Facility

cell line

HepG2

cell type

hepatocellular carcinoma

antibody

Santa Cruz - sc-32761X

antibody lot

F1913

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin Immunoprecipitation on 2e7 cells using antibodies noted in Samples section NEB Next Reagents for Illumina Sequencing

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

18115662

Reads aligned (%)

98.2

Duplicates removed (%)

26.6

Number of peaks

332 (qval < 1E-05)

hg19

Number of total reads

18115662

Reads aligned (%)

97.4

Duplicates removed (%)

28.2

Number of peaks

329 (qval < 1E-05)