Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2_Arid1a_ChIP
biomaterial_provider
Cell Line from UNC Tissue Culture Facility
cell line
HepG2
cell type
hepatocellular carcinoma
antibody
Santa Cruz - sc-32761X
antibody lot
F1913

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin Immunoprecipitation on 2e7 cells using antibodies noted in Samples section NEB Next Reagents for Illumina Sequencing

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
18115662
Reads aligned (%)
69.9
Duplicates removed (%)
28.2
Number of peaks
329 (qval < 1E-05)

hg38

Number of total reads
18115662
Reads aligned (%)
72.1
Duplicates removed (%)
26.6
Number of peaks
332 (qval < 1E-05)

Base call quality data from DBCLS SRA