Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic stomach
NA
NA

Attributes by original data submitter

Sample

source_name
Immortalized E13.5 stomach mesenchymal cells
strain
C57BL/6
tissue
Stomach
passage
8-11
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed in 1.1% formaldehyde in phosphate-buffered saline for 10 min at room temperature. Nuclei were extracted in a hypotonic buffer and chromatin was sheared by sonication. Immunoprecipitation was done using 10 ug of Flag M2 antibody (Sigma) and Protein G dynabeads (Invitrogen). DNA was amplified using ThruPLEX kit (Rubicon Genomics)

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
128632096
Reads aligned (%)
86.7
Duplicates removed (%)
10.1
Number of peaks
996 (qval < 1E-05)

mm9

Number of total reads
128632096
Reads aligned (%)
86.5
Duplicates removed (%)
10.0
Number of peaks
1116 (qval < 1E-05)

Base call quality data from DBCLS SRA