SRX104390
GSM824844: WCE Nocodazole mES MM8

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
chip antibody
None WCE
cell line
V6.5 embryonic stem cells
treatment
200 ng/ml nocodazole
time
12 hr

Sequenced DNA Library

library_name
GSM824844: WCE Nocodazole mES MM8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35162299
Reads aligned (%)
84.6
Duplicates removed (%)
38.6
Number of peaks
769 (qval < 1E-05)

mm9

Number of total reads
35162299
Reads aligned (%)
84.4
Duplicates removed (%)
38.7
Number of peaks
866 (qval < 1E-05)

Base call quality data from DBCLS SRA