ChIP-Atlas: SRX104385

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic stem cells
chip antibody: None WCE
cell line: V6.5 embryonic stem cells
knockdown: Nipbl

Sequenced DNA Library

library_name: GSM824839: WCE shNipbl mES MM8
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 12335054
Reads aligned (%): 83.8
Duplicates removed (%): 19.1
Number of peaks: 402 (qval < 1E-05)

mm9

Number of total reads: 12335054
Reads aligned (%): 83.7
Duplicates removed (%): 19.3
Number of peaks: 434 (qval < 1E-05)

Base call quality data from DBCLS SRA