SRX104232
GSM826704: CME019; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Sox9 ChIP-seq IgG control
Stage
E13.5 embryos
strain
CD1 wildtype
tissue
Limbs and tails
chip antibody
goat IgG

Sequenced DNA Library

library_name
GSM826704: CME019
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42660508
Reads aligned (%)
71.0
Duplicates removed (%)
9.4
Number of peaks
647 (qval < 1E-05)

mm9

Number of total reads
42660508
Reads aligned (%)
70.8
Duplicates removed (%)
9.4
Number of peaks
747 (qval < 1E-05)

Base call quality data from DBCLS SRA