Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF4

Cell type

Cell type Class
Blood
Cell type
HAP1
NA
NA

Attributes by original data submitter

Sample

source_name
HAP1, 2 mM histidinol for 24 hours, ATF4 ChIP
cell line
HAP1
treatment
2 mM histidinol, 24 hours
chip antibody
ATF4 (Millipore, ABE387)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
27095528
Reads aligned (%)
77.9
Duplicates removed (%)
19.1
Number of peaks
15490 (qval < 1E-05)

hg38

Number of total reads
27095528
Reads aligned (%)
79.6
Duplicates removed (%)
18.0
Number of peaks
15478 (qval < 1E-05)

Base call quality data from DBCLS SRA