Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RARA

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
Neuroblastoma SK-N-SH control cells, RA treated
cell type
human neuroblastoma cells
cell line
SK-N-SH
chip antibody
RARα (C-20), Santa Cruz,Cat No. Sc551
treatment
RA treated

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
15578663
Reads aligned (%)
68.4
Duplicates removed (%)
12.1
Number of peaks
712 (qval < 1E-05)

hg38

Number of total reads
15578663
Reads aligned (%)
69.7
Duplicates removed (%)
11.2
Number of peaks
680 (qval < 1E-05)

Base call quality data from DBCLS SRA