SRX103448
GSM823382: BRD4 untreated hESC ChIPseq; Homo sapiens; ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cells
cell type
Embryonic Stem Cells
chip antibody
BRD4 (Abcam; Cat no. ab46199; Lot no. 613288)
treatment
untreated

Sequenced DNA Library

library_name
GSM823382: BRD4_untreated_hESC_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23422710
Reads aligned (%)
82.8
Duplicates removed (%)
66.9
Number of peaks
13078 (qval < 1E-05)

hg19

Number of total reads
23422710
Reads aligned (%)
82.5
Duplicates removed (%)
67.3
Number of peaks
13712 (qval < 1E-05)

Base call quality data from DBCLS SRA