SRX103446
GSM823380: PolII4H8 JQ1treated Tcell ChIPseq; Homo sapiens; ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
cell type
CD4+ T cells
chip antibody
PolII4H8 (Abcam; Cat no. ab5408; Lot no. 722997)
treatment
JQ1 treated

Sequenced DNA Library

library_name
GSM823380: PolII4H8_JQ1treated_Tcell_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11866118
Reads aligned (%)
89.4
Duplicates removed (%)
30.9
Number of peaks
14611 (qval < 1E-05)

hg19

Number of total reads
11866118
Reads aligned (%)
88.8
Duplicates removed (%)
31.7
Number of peaks
14693 (qval < 1E-05)

Base call quality data from DBCLS SRA