ChIP-Atlas: SRX103445

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: BRD4

Cell type

Cell type Class: Blood
Cell type: CD4+ T cells
NA: NA

Attributes by original data submitter

Sample

source_name: CD4+ T cells
cell type: CD4+ T cells
chip antibody: BRD4 (Abcam; Cat no. ab46199; Lot no. 613288)
treatment: JQ1 treated

Sequenced DNA Library

library_name: GSM823379: BRD4_JQ1treated_Tcell_ChIPseq
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 30219700
Reads aligned (%): 80.9
Duplicates removed (%): 45.7
Number of peaks: 3477 (qval < 1E-05)

hg19

Number of total reads: 30219700
Reads aligned (%): 80.1
Duplicates removed (%): 47.5
Number of peaks: 3578 (qval < 1E-05)

Base call quality data from DBCLS SRA