SRX103444
GSM823378: BRD4 untreated Tcell ChIPseq; Homo sapiens; ChIP

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
cell type
CD4+ T cells
chip antibody
BRD4 (Abcam; Cat no. ab46199; Lot no. 613288)
treatment
untreated

Sequenced DNA Library

library_name
GSM823378: BRD4_untreated_Tcell_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
48044893
Reads aligned (%)
34.6
Duplicates removed (%)
35.3
Number of peaks
10948 (qval < 1E-05)

hg38

Number of total reads
48044893
Reads aligned (%)
35.9
Duplicates removed (%)
33.4
Number of peaks
10967 (qval < 1E-05)

Base call quality data from DBCLS SRA