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For hg19
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: BRD4
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX103444
GSM823378: BRD4 untreated Tcell ChIPseq; Homo sapiens; ChIP
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
BRD4
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD4+ T cells
cell type
CD4+ T cells
chip antibody
BRD4 (Abcam; Cat no. ab46199; Lot no. 613288)
treatment
untreated
Sequenced DNA Library
library_name
GSM823378: BRD4_untreated_Tcell_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
48044893
Reads aligned (%)
34.6
Duplicates removed (%)
35.3
Number of peaks
10948 (qval < 1E-05)
hg38
Number of total reads
48044893
Reads aligned (%)
35.9
Duplicates removed (%)
33.4
Number of peaks
10967 (qval < 1E-05)
Base call quality data from
DBCLS SRA