SRX1033300
ChIPseq of H3K36me3 in activated T cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

isolate
crosslink
age
N/A
biomaterial_provider
N/A
sex
N/A
tissue
CD4+ activated T cells

Sequenced DNA Library

library_name
activated_H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
212159987
Reads aligned (%)
95.2
Duplicates removed (%)
7.8
Number of peaks
83944 (qval < 1E-05)

hg19

Number of total reads
212159987
Reads aligned (%)
94.7
Duplicates removed (%)
8.7
Number of peaks
83625 (qval < 1E-05)

Base call quality data from DBCLS SRA