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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GATA2
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1033280
GSM1691152: LNCaP shGATA2 R1881 (10nM,16h) GATA2 ChIP m76; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GATA2
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
LNCaP shGATA2 R1881 (10nM,16h) GATA2 ChIP m76
cell line
LNCaP
cell type
prostate tumor
treatment
R1881 (10nM,16h)
antibody
GATA2 (santa cruz, catalog# sc-9008, lot# H1511)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions.
Sequencing Platform
instrument_model
Illumina HiScanSQ
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16193154
Reads aligned (%)
77.0
Duplicates removed (%)
14.9
Number of peaks
7524 (qval < 1E-05)
hg19
Number of total reads
16193154
Reads aligned (%)
76.5
Duplicates removed (%)
15.9
Number of peaks
7637 (qval < 1E-05)
Base call quality data from
DBCLS SRA