Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: twi
wikigenes
PDBj
CellType: 2-4h embryos
ATCC
MeSH
RIKEN BRC
SRX1032414
GSM1689698: tl10b twi 1; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
twi
Cell type
Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
tl10b embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
tl10b
chip antibody
Custom Covance Twi (aa 340-490)
barcode kit
NEB-next-ChIP
library kit
NEB-next-ChIP
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
24170982
Reads aligned (%)
54.7
Duplicates removed (%)
39.8
Number of peaks
17340 (qval < 1E-05)
dm6
Number of total reads
24170982
Reads aligned (%)
50.6
Duplicates removed (%)
44.0
Number of peaks
15545 (qval < 1E-05)
Base call quality data from
DBCLS SRA