Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K4me1
Cell type Class
Embryo
Cell type
2-4h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
tl10b embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
tl10b
chip antibody
H3K4me1 (Active Motif Carlsbad, CA, catalog #39635)
barcode kit
Biooscientific
library kit
Millipore

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
13165326
Reads aligned (%)
92.3
Duplicates removed (%)
33.0
Number of peaks
4891 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA