Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
sna

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
orer embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
wild type
chip antibody
Custom GenScript Sna (Full length) 134626-2
barcode kit
NEB-next-ChIP
library kit
NEB-next-ChIP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm3

Number of total reads
50712068
Reads aligned (%)
55.2
Duplicates removed (%)
42.2
Number of peaks
21064 (qval < 1E-05)

dm6

Number of total reads
50712068
Reads aligned (%)
51.2
Duplicates removed (%)
46.0
Number of peaks
20343 (qval < 1E-05)

Base call quality data from DBCLS SRA