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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Pc
wikigenes
PDBj
CellType: 2-4h embryos
ATCC
MeSH
RIKEN BRC
SRX1032403
GSM1689687: orer pc 1; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Pc
Cell type
Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
orer embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
wild type
chip antibody
Pc (d-220) (Santa Cruz, catalog #sc-25762)
barcode kit
none
library kit
NEB-next-DNA
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
31179457
Reads aligned (%)
73.4
Duplicates removed (%)
27.1
Number of peaks
3833 (qval < 1E-05)
dm3
Number of total reads
31179457
Reads aligned (%)
73.8
Duplicates removed (%)
24.8
Number of peaks
3103 (qval < 1E-05)
Base call quality data from
DBCLS SRA