Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pc

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
orer embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
wild type
chip antibody
Pc (d-220) (Santa Cruz, catalog #sc-25762)
barcode kit
none
library kit
NEB-next-DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
31179457
Reads aligned (%)
55.5
Duplicates removed (%)
24.8
Number of peaks
3103 (qval < 1E-05)

dm6

Number of total reads
31179457
Reads aligned (%)
53.5
Duplicates removed (%)
27.1
Number of peaks
3833 (qval < 1E-05)

Base call quality data from DBCLS SRA