Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Embryo

Cell type

2-4h embryos

NA

NA

Sample

source_name

gd7 embryos

developmental stage

2-4 hr after egg deposition

genotype/variation

gd7

chip antibody

none

barcode kit

custom

library kit

NEB-next-DNA

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

dm6

Number of total reads

16658678

Reads aligned (%)

94.5

Duplicates removed (%)

12.0

Number of peaks

2942 (qval < 1E-05)

dm3

Number of total reads

16658678

Reads aligned (%)

95.3

Duplicates removed (%)

8.1

Number of peaks

1856 (qval < 1E-05)