Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K4me1
Cell type Class
Embryo
Cell type
2-4h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
gd7 embryos
developmental stage
2-4 hr after egg deposition
genotype/variation
gd7
chip antibody
H3K4me1 (Active Motif Carlsbad, CA, catalog #39635)
barcode kit
none
library kit
NEB-next-DNA

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was performed according to He et al. (2011) with whole cell extract (WCE) derived from 100 mg embryos per ChIP

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
38812846
Reads aligned (%)
92.8
Duplicates removed (%)
36.4
Number of peaks
3545 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA