SRX103225
GSM624144: Control ChIPseq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1, control ChIP-Seq
cell line
THP-1
cell type
monocytic cells
treatment 1
differentiation with PMA (50ng/ml;40hrs)
treatment 2
1.5 h of 1microM Rosiglitazone
chip antibody
normal mouse IgG
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM624144: Control_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43297971
Reads aligned (%)
61.5
Duplicates removed (%)
4.7
Number of peaks
1038 (qval < 1E-05)

hg19

Number of total reads
43297971
Reads aligned (%)
60.8
Duplicates removed (%)
6.0
Number of peaks
1149 (qval < 1E-05)

Base call quality data from DBCLS SRA