Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1, PU.1 ChIP-Seq
cell line
THP-1
cell type
monocytic cells
treatment 1
differentiation with PMA (50ng/ml;40hrs)
treatment 2
1.5 h of 1microM Rosiglitazone
chip antibody
anti-PU.1
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM624143: PU.1_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
16490701
Reads aligned (%)
92.7
Duplicates removed (%)
4.6
Number of peaks
25717 (qval < 1E-05)

hg38

Number of total reads
16490701
Reads aligned (%)
94.2
Duplicates removed (%)
3.9
Number of peaks
25678 (qval < 1E-05)

Base call quality data from DBCLS SRA