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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SPI1
wikigenes
PDBj
CellType: THP-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX103224
GSM624143: PU.1 ChIPseq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SPI1
Cell type
Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
THP-1, PU.1 ChIP-Seq
cell line
THP-1
cell type
monocytic cells
treatment 1
differentiation with PMA (50ng/ml;40hrs)
treatment 2
1.5 h of 1microM Rosiglitazone
chip antibody
anti-PU.1
antibody vendor
Santa Cruz
Sequenced DNA Library
library_name
GSM624143: PU.1_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
16490701
Reads aligned (%)
92.7
Duplicates removed (%)
4.6
Number of peaks
25717 (qval < 1E-05)
hg38
Number of total reads
16490701
Reads aligned (%)
94.2
Duplicates removed (%)
3.9
Number of peaks
25678 (qval < 1E-05)
Base call quality data from
DBCLS SRA