Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1, RXR ChIP-Seq
cell line
THP-1
cell type
monocytic cells
treatment 1
differentiation with PMA (50ng/ml;40hrs)
treatment 2
1.5 h of 1microM Rosiglitazone
chip antibody
anti-pan-RXR
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM624142: RXR_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
9225168
Reads aligned (%)
88.1
Duplicates removed (%)
2.8
Number of peaks
621 (qval < 1E-05)

hg38

Number of total reads
9225168
Reads aligned (%)
90.3
Duplicates removed (%)
1.6
Number of peaks
498 (qval < 1E-05)

Base call quality data from DBCLS SRA