Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tal1

Cell type

Cell type Class
Blood
Cell type
G1E-ER4+E2
Tissue
Blood
Lineage
cellLine
Description
Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

Attributes by original data submitter

Sample

source_name
G1E-ER4
chip antibody
TAL1 (sc12984)
cell type
G1E-ER4
cell description
Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
strain
129

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GATA1(or TAL1)-DNA complexes were isolated with antibody. ChIP-exo libraries were prepared for sequencing using standard SOLiD & Illumina protocols with a minor modification; Reference paper:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3813302/

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
5069351
Reads aligned (%)
84.3
Duplicates removed (%)
83.2
Number of peaks
369 (qval < 1E-05)

mm9

Number of total reads
5069351
Reads aligned (%)
84.1
Duplicates removed (%)
83.5
Number of peaks
369 (qval < 1E-05)

Base call quality data from DBCLS SRA