Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tal1

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E
chip antibody
TAL1 (sc12984)
cell type
G1E
cell description
Gata1- erythroid progenitor
strain
129

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GATA1(or TAL1)-DNA complexes were isolated with antibody. ChIP-exo libraries were prepared for sequencing using standard SOLiD & Illumina protocols with a minor modification; Reference paper:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3813302/

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
7529177
Reads aligned (%)
77.7
Duplicates removed (%)
84.4
Number of peaks
496 (qval < 1E-05)

mm9

Number of total reads
7529177
Reads aligned (%)
77.5
Duplicates removed (%)
84.7
Number of peaks
511 (qval < 1E-05)

Base call quality data from DBCLS SRA