Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Adenine N6-methylation

Cell type

Cell type Class
Adult
Cell type
Adult
NA
NA

Attributes by original data submitter

Sample

source_name
whole worm WT gDNA
antibody
6mA
developmental stage
WT (N2) mixed stage worms

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Worms were washed several times with M9 buffer and snap frozen in liquid nitrogen. Pellets were sent to Umass Medical School Deep Sequencing Core for gDNA extraction and ChIP-Seq Library was constructed by Umass Medical School Deep sequencing core

Sequencing Platform

instrument_model
Illumina HiSeq 2500

ce11

Number of total reads
29502971
Reads aligned (%)
100.0
Duplicates removed (%)
4.8
Number of peaks
0 (qval < 1E-05)

ce10

Number of total reads
29502971
Reads aligned (%)
100.0
Duplicates removed (%)
4.8
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA