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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Adenine N6-methylation
wikigenes
PDBj
CellType: Adult
ATCC
MeSH
RIKEN BRC
SRX1030169
GSM1688840: ChIP-Seq; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Adenine N6-methylation
Cell type
Cell type Class
Adult
Cell type
Adult
NA
NA
Attributes by original data submitter
Sample
source_name
whole worm WT gDNA
antibody
6mA
developmental stage
WT (N2) mixed stage worms
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Worms were washed several times with M9 buffer and snap frozen in liquid nitrogen. Pellets were sent to Umass Medical School Deep Sequencing Core for gDNA extraction and ChIP-Seq Library was constructed by Umass Medical School Deep sequencing core
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
29502971
Reads aligned (%)
100.0
Duplicates removed (%)
4.8
Number of peaks
0 (qval < 1E-05)
ce10
Number of total reads
29502971
Reads aligned (%)
100.0
Duplicates removed (%)
4.8
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA