Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
treatment
None
treatment description
No special treatment or protocol applies
controlid
wgEncodeEH000538
labversion
Illumina, pooled,fseq v 1.84
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
HepG2/Input
labversion
align_on_cluster_bwa.pl v 1

Sequenced DNA Library

library_name
GSM822314: UT-A_ChipSeq_HepG2_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
12326775
Reads aligned (%)
94.1
Duplicates removed (%)
25.7
Number of peaks
232 (qval < 1E-05)

hg19

Number of total reads
12326775
Reads aligned (%)
93.2
Duplicates removed (%)
26.6
Number of peaks
481 (qval < 1E-05)

Base call quality data from DBCLS SRA