SRX103012
GSM822313: UT-A ChipSeq HeLa-S3 Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell lineage
ectoderm
treatment
None
treatment description
No special treatment or protocol applies
controlid
wgEncodeEH000539
labversion
Illumina, pooled,fseq v 1.84
cell karyotype
cancer
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
HeLa-S3/Input
labversion
align_on_cluster_bwa.pl v 1

Sequenced DNA Library

library_name
GSM822313: UT-A_ChipSeq_HeLa-S3_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12316660
Reads aligned (%)
93.3
Duplicates removed (%)
21.4
Number of peaks
397 (qval < 1E-05)

hg19

Number of total reads
12316660
Reads aligned (%)
92.5
Duplicates removed (%)
22.5
Number of peaks
495 (qval < 1E-05)

Base call quality data from DBCLS SRA