Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
treatment
None
treatment description
No special treatment or protocol applies
antibody antibodydescription
Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-764
controlid
wgEncodeEH000529
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.01,1% ENCODE array platform validation tests,fseq v 1.84, iff_K562
replicate
1,3,2
antibody antibodydescription
rabbit polyclonal to amino acids 1-262 of c-Myc human origin
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
controlid
K562/Input
labversion
align_on_cluster_bwa.pl v 1
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM822310: UT-A_ChipSeq_K562_c-Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
39045529
Reads aligned (%)
87.0
Duplicates removed (%)
23.5
Number of peaks
18794 (qval < 1E-05)

hg19

Number of total reads
39045529
Reads aligned (%)
86.2
Duplicates removed (%)
25.2
Number of peaks
18654 (qval < 1E-05)

Base call quality data from DBCLS SRA