Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis
treatment
None
treatment description
No special treatment or protocol applies
controlid
wgEncodeEH002077
labversion
fseq v 1.84
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
A549/Input
labversion
align_on_cluster_bwa.pl v 1

Sequenced DNA Library

library_name
GSM822307: UT-A_ChipSeq_A549_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
41520209
Reads aligned (%)
99.2
Duplicates removed (%)
7.0
Number of peaks
1219 (qval < 1E-05)

hg19

Number of total reads
41520209
Reads aligned (%)
98.8
Duplicates removed (%)
7.6
Number of peaks
1423 (qval < 1E-05)

Base call quality data from DBCLS SRA