Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVEC
biomaterial_provider
Lonza
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
treatment
None
treatment description
No special treatment or protocol applies
antibody antibodydescription
mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
controlid
wgEncodeEH000550
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_HUVEC
replicate
1,2
antibody antibodydescription
mouse monoclonal, clone 8WG16
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
controlid
HUVEC/Input
labversion
align_on_cluster_bwa.pl v 1
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM822306: UT-A_ChipSeq_HUVEC_Pol2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
30674512
Reads aligned (%)
91.8
Duplicates removed (%)
44.5
Number of peaks
21479 (qval < 1E-05)

hg19

Number of total reads
30674512
Reads aligned (%)
90.8
Duplicates removed (%)
44.5
Number of peaks
21498 (qval < 1E-05)

Base call quality data from DBCLS SRA