Antigen

Antigen Class

TFs and others

Antigen

MYC

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MCF-7

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis

antibody antibodydescription

Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-764

controlid

wgEncodeEH000589

labversion

baseAlignCounts.pl v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05

replicate

1,2

treatment

estrogen

treatment description

45 min with 100 nM Estradiol (Crawford)

antibody

c-Myc

antibody antibodydescription

rabbit polyclonal to amino acids 1-262 of c-Myc human origin

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-764

controlid

MCF-7/Input

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM822304: UT-A_ChipSeq_MCF-7_estrogen_c-Myc

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

118116975

Reads aligned (%)

97.7

Duplicates removed (%)

11.6

Number of peaks

36652 (qval < 1E-05)

hg19

Number of total reads

118116975

Reads aligned (%)

97.1

Duplicates removed (%)

12.7

Number of peaks

39756 (qval < 1E-05)