Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Monocytes-CD14+
Tissue
monocytes
Lineage
mesoderm
Description
Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Attributes by original data submitter

Sample

source_name
Monocytes-CD14+
biomaterial_provider
S. Heimfeld Laboratory, FHCRC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Monocytes-CD14+_RO01746
cell description
Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), Monocytes-CD14+_RO01746 and Monocytes-CD14+_RO01826 are being used as replicates, newly promoted to tier 2: not in 2011 analysis
treatment
None
treatment description
No special treatment or protocol applies
controlid
wgEncodeEH001137
labversion
fseq v 1.84
cell lineage
mesoderm
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
Monocytes-CD14+/Input
labversion
align_on_cluster_bwa.pl v 1

Sequenced DNA Library

library_name
GSM822296: UT-A_ChipSeq_Monocytes-CD14+_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
31471006
Reads aligned (%)
99.0
Duplicates removed (%)
2.0
Number of peaks
1566 (qval < 1E-05)

hg19

Number of total reads
31471006
Reads aligned (%)
98.6
Duplicates removed (%)
2.5
Number of peaks
1302 (qval < 1E-05)

Base call quality data from DBCLS SRA