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For hg38
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BigWig
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MYC
wikigenes
PDBj
CellType: Hep G2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX102990
GSM822291: UT-A ChipSeq HepG2 c-Myc
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MYC
Cell type
Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
treatment
None
treatment description
No special treatment or protocol applies
antibody antibodydescription
Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-764
controlid
wgEncodeEH000538
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_HepG2,1% ENCODE array platform validation tests
replicate
1,3,2
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
controlid
HepG2/Input
labversion
align_on_cluster_bwa.pl v 1
replicate
1
replicate description
tier 1
Sequenced DNA Library
library_name
GSM822291: UT-A_ChipSeq_HepG2_c-Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
26802925
Reads aligned (%)
91.6
Duplicates removed (%)
4.9
Number of peaks
12459 (qval < 1E-05)
hg19
Number of total reads
26802925
Reads aligned (%)
90.8
Duplicates removed (%)
6.0
Number of peaks
12382 (qval < 1E-05)
Base call quality data from
DBCLS SRA