Antigen

Antigen Class

TFs and others

Antigen

MYC

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

treatment

None

treatment description

No special treatment or protocol applies

antibody antibodydescription

Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-764

controlid

wgEncodeEH000528

labversion

baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,fseq v 1.84, iff_GM12878,p-value cutoff: 0.001

replicate

1,2

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-764

controlid

GM12878/Input

labversion

align_on_cluster_bwa.pl v 1

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM822290: UT-A_ChipSeq_GM12878_c-Myc

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

33662802

Reads aligned (%)

82.6

Duplicates removed (%)

29.3

Number of peaks

2705 (qval < 1E-05)

hg19

Number of total reads

33662802

Reads aligned (%)

81.7

Duplicates removed (%)

31.0

Number of peaks

1805 (qval < 1E-05)