SRX102985
GSM822286: UT-A ChipSeq HeLa-S3 c-Myc

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell lineage
ectoderm
treatment
None
treatment description
No special treatment or protocol applies
antibody antibodydescription
Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-764
controlid
wgEncodeEH000539
labversion
baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_HelaS3,1% ENCODE array platform validation tests
replicate
1,2
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
controlid
HeLa-S3/Input
labversion
align_on_cluster_bwa.pl v 1
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM822286: UT-A_ChipSeq_HeLa-S3_c-Myc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14712777
Reads aligned (%)
94.2
Duplicates removed (%)
3.2
Number of peaks
3820 (qval < 1E-05)

hg19

Number of total reads
14712777
Reads aligned (%)
93.3
Duplicates removed (%)
4.4
Number of peaks
3786 (qval < 1E-05)

Base call quality data from DBCLS SRA