SRX102976
GSM822275: UT-A ChipSeq K562 Pol2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
treatment
None
treatment description
No special treatment or protocol applies
antibody antibodydescription
mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
controlid
wgEncodeEH000529
labversion
baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_K562
replicate
1,2
antibody antibodydescription
mouse monoclonal, clone 8WG16
antibody targetdescription
RNA Polymerase II
antibody vendorname
Covance
antibody vendorid
MMS-126R
controlid
K562/Input
labversion
align_on_cluster_bwa.pl v 1
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM822275: UT-A_ChipSeq_K562_Pol2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44489629
Reads aligned (%)
90.5
Duplicates removed (%)
29.3
Number of peaks
28659 (qval < 1E-05)

hg19

Number of total reads
44489629
Reads aligned (%)
89.8
Duplicates removed (%)
29.6
Number of peaks
28593 (qval < 1E-05)

Base call quality data from DBCLS SRA